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Toxicant Substitutes in Immunological Assays for Mycotoxins Detection: A Mini Review
Recurring mycotoxins contamination has posedaseriousthreatto food safety worldwide. Competitive immunoassays are widely used techniques …
Ping Li
,
Shengliang Deng
,
Zhenjiang Zech Xu
Cite
DOI
A Pilot Study of Microbial Succession in Human Rib Skeletal Remains during Terrestrial Decomposition
The bones of decomposing vertebrates are colonized by a succession of diverse microbial communities. If this succession is similar …
Heather Deel
,
Alexandra L. Emmons
,
Jennifer Kiely
,
Franklin E. Damann
,
David O. Carter
,
Aaron Lynne
,
Rob Knight
,
Zhenjiang Zech Xu
,
Sibyl Bucheli
,
Jessica L. Metcalf
Cite
DOI
Alteration in Gut Microbiota Is Associated with Dysregulation of Cytokines and Glucocorticoid Therapy in Systemic Lupus Erythematosus
A growing corpus of evidence implicates the involvement of the commensal microbiota and immune cytokines in the initiation and …
Mengchen Guo
,
Huixia Wang
,
Sixie Xu
,
Yaoyao Zhuang
,
Jingang An
,
Chuan Su
,
Yankai Xia
,
Jingyun Chen
,
Zhenjiang Zech Xu
,
Qisha Liu
,
Jianwei Wang
,
Zhou Dan
,
Kun Chen
,
Xiaoting Luan
,
Zhi Liu
,
Kangjian Liu
,
Faming Zhang
,
Yumin Xia
,
Xingyin Liu
Cite
DOI
Vitamin D Metabolites and the Gut Microbiome in Older Men
The vitamin D receptor is highly expressed in the gastrointestinal tract where it transacts gene expression. With current limited …
Robert L. Thomas
,
Lingjing Jiang
,
John S. Adams
,
Zhenjiang Zech Xu
,
Jian Shen
,
Stefan Janssen
,
Gail Ackermann
,
Dirk Vanderschueren
,
Steven Pauwels
,
Rob Knight
,
Eric S. Orwoll
,
Deborah M. Kado
Cite
DOI
Multiple-Disease Detection and Classification across Cohorts via Microbiome Search
Microbiome-based disease classification depends on well-validated disease-specific models or a priori organismal markers. These are …
Xiaoquan Su
,
Gongchao Jing
,
Zheng Sun
,
Lu Liu
,
Zhenjiang Zech Xu
,
Daniel McDonald
,
Zengbin Wang
,
Honglei Wang
,
Antonio Gonzalez
,
Yufeng Zhang
,
Shi Huang
,
Gavin Huttley
,
Rob Knight
,
Jian Xu
Cite
DOI
Human Skin, Oral, and Gut Microbiomes Predict Chronological Age
Human gut microbiomes are known to change with age, yet the relative value of human microbiomes across the body as predictors of age, …
Shi Huang
,
Niina Haiminen
,
Anna-Paola Carrieri
,
Rebecca Hu
,
Lingjing Jiang
,
Laxmi Parida
,
Baylee Russell
,
Celeste Allaband
,
Amir Zarrinpar
,
Yoshiki \V\\ 'A\zquez-Baeza\
,
Pedro Belda-Ferre
,
Hongwei Zhou
,
Ho-Cheol Kim
,
Austin D. Swafford
,
Rob Knight
,
Zhenjiang Zech Xu
Cite
DOI
Phylogenomics of 10,575 Genomes Reveals Evolutionary Proximity between Domains Bacteria and Archaea
Rapid growth of genome data provides opportunities for updating microbial evolutionary relationships, but this is challenged by the …
Qiyun Zhu
,
Uyen Mai
,
Wayne Pfeiffer
,
Stefan Janssen
,
Francesco Asnicar
,
Jon G. Sanders
,
Pedro Belda-Ferre
,
Gabriel A. Al-Ghalith
,
Evguenia Kopylova
,
Daniel McDonald
,
Tomasz Kosciolek
,
John B. Yin
,
Shi Huang
,
Nimaichand Salam
,
Jian-Yu Jiao
,
Zijun Wu
,
Zhenjiang Zech Xu
,
Kalen Cantrell
,
Yimeng Yang
,
Erfan Sayyari
,
Maryam Rabiee
,
James T. Morton
,
Sheila Podell
,
Dan Knights
,
Wen-Jun Li
,
Curtis Huttenhower
,
Nicola Segata
,
Larry Smarr
,
Siavash Mirarab
,
Rob Knight
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DOI
Chlorogenic Acid Attenuates Cadmium-Induced Intestinal Injury in Sprague--Dawley Rats
Chronic exposure to cadmium (Cd) causes remarkable damage to the liver and gastrointestinal tract. Previous studies have revealed that …
Yanwen Xue
,
Fang Huang
,
Rongxue Tang
,
Qingsheng Fan
,
Bing Zhang
,
Zhenjiang Zech Xu
,
Xiaoming Sun
,
Zheng Ruan
Cite
DOI
Optimizing Sequencing Protocols for Leaderboard Metagenomics by Combining Long and Short Reads
As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of …
Jon G. Sanders
,
Sergey Nurk
,
Rodolfo A. Salido
,
Jeremiah Minich
,
Zhenjiang Zech Xu
,
Qiyun Zhu
,
Cameron Martino
,
Marcus Fedarko
,
Timothy D. Arthur
,
Feng Chen
,
Brigid S. Boland
,
Greg C. Humphrey
,
Caitriona Brennan
,
Karenina Sanders
,
James Gaffney
,
Kristen Jepsen
,
Mahdieh Khosroheidari
,
Cliff Green
,
Marlon Liyanage
,
Jason W. Dang
,
Vanessa v. Phelan
,
Robert A. Quinn
,
Anton Bankevich
,
John T. Chang
,
Tariq M. Rana
,
Douglas J. Conrad
,
William J. Sandborn
,
Larry Smarr
,
Pieter C. Dorrestein
,
Pavel A. Pevzner
,
Rob Knight
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DOI
Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2
Correspondence,
Evan Bolyen
,
Jai Ram Rideout
,
Matthew R. Dillon
,
Nicholas A. Bokulich
,
Christian C. Abnet
,
Gabriel A. Al-Ghalith
,
Harriet Alexander
,
Eric J. Alm
,
Manimozhiyan Arumugam
,
Francesco Asnicar
,
Yang Bai
,
Jordan E. Bisanz
,
Kyle Bittinger
,
Asker Brejnrod
,
Colin J. Brislawn
,
C. Titus Brown
,
Benjamin J. Callahan
,
Andr\\ 'E\s Mauricio \Caraballo-Rodr\\ 'I\guez\
,
John Chase
,
Emily K. Cope
,
Ricardo Da Silva
,
Christian Diener
,
Pieter C. Dorrestein
,
Gavin M. Douglas
,
Daniel M. Durall
,
Claire Duvallet
,
Christian F. Edwardson
,
Madeleine Ernst
,
Mehrbod Estaki
,
Jennifer Fouquier
,
Julia M. Gauglitz
,
Sean M. Gibbons
,
Deanna L. Gibson
,
Antonio Gonzalez
,
Kestrel Gorlick
,
Jiarong Guo
,
Benjamin Hillmann
,
Susan Holmes
,
Hannes Holste
,
Curtis Huttenhower
,
Gavin A. Huttley
,
Stefan Janssen
,
Alan K. Jarmusch
,
Lingjing Jiang
,
Benjamin D. Kaehler
,
Kyo Bin Kang
,
Christopher R. Keefe
,
Paul Keim
,
Scott T. Kelley
,
Dan Knights
,
Irina Koester
,
Tomasz Kosciolek
,
Jorden Kreps
,
Morgan G. I. Langille
,
Joslynn Lee
,
Ruth Ley
,
Yong-Xin Liu
,
Erikka Loftfield
,
Catherine Lozupone
,
Massoud Maher
,
Clarisse Marotz
,
Bryan D. Martin
,
Daniel McDonald
,
Lauren J. McIver
,
Alexey v. Melnik
,
Jessica L. Metcalf
,
Sydney C. Morgan
,
Jamie T. Morton
,
Ahmad Turan Naimey
,
Jose A. Navas-Molina
,
Louis Felix Nothias
,
Stephanie B. Orchanian
,
Talima Pearson
,
Samuel L. Peoples
,
Daniel Petras
,
Mary Lai Preuss
,
Elmar Pruesse
,
Lasse Buur Rasmussen
,
Adam Rivers
,
Michael S. Robeson
,
Patrick Rosenthal
,
Nicola Segata
,
Michael Shaffer
,
Arron Shiffer
,
Rashmi Sinha
,
Se Jin Song
,
John R. Spear
,
Austin D. Swafford
,
Luke R. Thompson
,
Pedro J. Torres
,
Pauline Trinh
,
Anupriya Tripathi
,
Peter J. Turnbaugh
,
Sabah Ul-Hasan
,
Justin J. J. Van Der Hooft
,
Fernando Vargas
,
Yoshiki \V\\ 'A\zquez-Baeza\
,
Emily Vogtmann
,
Max Von Hippel
,
William Walters
,
Yunhu Wan
,
Mingxun Wang
,
Jonathan Warren
,
Kyle C. Weber
,
Charles H. D. Williamson
,
Amy D. Willis
,
Zhenjiang Zech Xu
,
Jesse R. Zaneveld
,
Yilong Zhang
,
Qiyun Zhu
,
Rob Knight
,
J. Gregory Caporaso
Cite
DOI
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