Daniel McDonald | 徐振江实验室https://xulab-zotero-test.pages.dev/zh/author/daniel-mcdonald/Daniel McDonaldHugo Blox Builder (https://hugoblox.com)zh-CNSun, 01 Feb 2026 00:00:00 +0000https://xulab-zotero-test.pages.dev/media/icon_hu_9d9b593248f3c06d.pngDaniel McDonaldhttps://xulab-zotero-test.pages.dev/zh/author/daniel-mcdonald/Scikit-Bio: A Fundamental Python Library for Biological Omic Data Analysishttps://xulab-zotero-test.pages.dev/zh/publication/aton-scikitbio-fundamental-python-2026/Sun, 01 Feb 2026 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/aton-scikitbio-fundamental-python-2026/A Conserved Interdomain Microbial Network Underpins Cadaver Decomposition despite Environmental Variableshttps://xulab-zotero-test.pages.dev/zh/publication/burcham-conserved-interdomain-microbial-2024/Fri, 01 Mar 2024 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/burcham-conserved-interdomain-microbial-2024/Multiple-Disease Detection and Classification across Cohorts via Microbiome Searchhttps://xulab-zotero-test.pages.dev/zh/publication/su-multiple-disease-detection-classification-2020/Wed, 01 Apr 2020 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/su-multiple-disease-detection-classification-2020/Phylogenomics of 10,575 Genomes Reveals Evolutionary Proximity between Domains Bacteria and Archaeahttps://xulab-zotero-test.pages.dev/zh/publication/zhu-phylogenomics-10575-genomes-2019/Sun, 01 Dec 2019 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/zhu-phylogenomics-10575-genomes-2019/Reproducible, Interactive, Scalable and Extensible Microbiome Data Science Using QIIME 2https://xulab-zotero-test.pages.dev/zh/publication/bolyen-reproducible-interactive-scalable-2019/Thu, 01 Aug 2019 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/bolyen-reproducible-interactive-scalable-2019/Calour: An Interactive, Microbe-Centric Analysis Toolhttps://xulab-zotero-test.pages.dev/zh/publication/xu-calour-interactive-microbe-centric-2019/Fri, 01 Feb 2019 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/xu-calour-interactive-microbe-centric-2019/Striped UniFrac: Enabling Microbiome Analysis at Unprecedented Scalehttps://xulab-zotero-test.pages.dev/zh/publication/mcdonald-striped-uni-frac-enabling-2018/Thu, 01 Nov 2018 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/mcdonald-striped-uni-frac-enabling-2018/Best Practices for Analysing Microbiomeshttps://xulab-zotero-test.pages.dev/zh/publication/knight-best-practices-analysing-2018/Sun, 01 Jul 2018 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/knight-best-practices-analysing-2018/American Gut: An Open Platform for Citizen Science Microbiome Researchhttps://xulab-zotero-test.pages.dev/zh/publication/mcdonald-american-gut-open-2018/Fri, 01 Jun 2018 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/mcdonald-american-gut-open-2018/Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Informationhttps://xulab-zotero-test.pages.dev/zh/publication/janssen-phylogenetic-placement-exact-2018/Fri, 01 Jun 2018 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/janssen-phylogenetic-placement-exact-2018/A Communal Catalogue Reveals Earth's Multiscale Microbial Diversityhttps://xulab-zotero-test.pages.dev/zh/publication/thompson-communal-catalogue-reveals-2017/Wed, 01 Nov 2017 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/thompson-communal-catalogue-reveals-2017/Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patternshttps://xulab-zotero-test.pages.dev/zh/publication/amir-deblur-rapidly-resolves-2017/Sat, 01 Apr 2017 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/amir-deblur-rapidly-resolves-2017/Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Projecthttps://xulab-zotero-test.pages.dev/zh/publication/debelius-turning-participatory-microbiome-2015/Thu, 01 Oct 2015 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/debelius-turning-participatory-microbiome-2015/Ribosomal RNA, the Lens into Lifehttps://xulab-zotero-test.pages.dev/zh/publication/mcdonald-ribosomal-rna-lens-2015/Thu, 01 Jan 2015 00:00:00 +0000https://xulab-zotero-test.pages.dev/zh/publication/mcdonald-ribosomal-rna-lens-2015/