Article-Journal

Trace Evidence Potential in Postmortem Skin Microbiomes: From Death Scene to Morgue
Microbes can be used effectively as trace evidence, at least in research settings. However, it is unknown whether skin microbiomes …
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Intermittent Hypoxia and Hypercapnia Reproducibly Change the Gut Microbiome and Metabolome across Rodent Model Systems
Studying perturbations in the gut ecosystem using animal models of disease continues to provide valuable insights into the role of the …
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A Gut Microbiome Signature for Cirrhosis Due to Nonalcoholic Fatty Liver Disease
The presence of cirrhosis in nonalcoholic-fatty-liver-disease (NAFLD) is the most important predictor of liver-related mortality. …
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Calour: An Interactive, Microbe-Centric Analysis Tool
Microbiome analyses can be challenging because microbial strains are numerous, and often, confounding factors in the data set are also …
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An Examination of Data from the American Gut Project Reveals That the Dominance of the Genus Bifidobacterium Is Associated with the Diversity and Robustness of the Gut Microbiota
Bifidobacterium and Lactobacillus are beneficial for human health, and many strains of these two genera are widely used as probiotics. …
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Identification of New High Affinity Targets for Roquin Based on Structural Conservation
Post-transcriptional gene regulation controls the amount of protein produced from a specific mRNA by altering both its decay and …
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Striped UniFrac: Enabling Microbiome Analysis at Unprecedented Scale
Correspondence
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Antibiotic-Induced Microbiome Depletion Alters Metabolic Homeostasis by Affecting Gut Signaling and Colonic Metabolism
Antibiotic-induced microbiome depletion (AIMD) has been used frequently to study the role of the gut microbiome in pathological …
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Best Practices for Analysing Microbiomes
Complex microbial communities shape the dynamics of various environments, ranging from the mammalian gastrointestinal tract to the …
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American Gut: An Open Platform for Citizen Science Microbiome Research
Although much work has linked the human microbiome to specific phenotypes and lifestyle variables, data from different projects have …
Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip v. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey v. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, The American Gut Consortium, Rob Knight
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